STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0048uracil-DNA glycosylase family protein. (210 aa)    
Predicted Functional Partners:
lp_3346
Hypothetical protein, DUF488 family.
 
    0.712
ssb
Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
   0.554
gpp
Glycoprotein endopeptidase, M22 family.
  
    0.513
ctpA
Carboxy-terminal proteinase, S41 family,peptidoglycan-bound; Belongs to the peptidase S41A family.
  
    0.474
calB
Coniferyl aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.454
pnbA
Nitrobenzoate reductase.
  
    0.453
lp_1420
Carboxyterminal processing proteinase, S41 family, membrane-anchored.
  
    0.417
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.