STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0063Hypothetical protein. (511 aa)    
Predicted Functional Partners:
lp_0060
Short-chain dehydrogenase/oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.835
lp_0155
Hypothetical protein.
   
    0.701
lp_0070
4-hydroxyphenylacetate-3-hydroxylase,C-terminus (pseudogene).
 
    0.687
lp_1988
Hypothetical membrane protein.
  
     0.678
cps3I
O-acetyltransferase.
  
     0.673
cps3F
Polysaccharide biosynthesis membrane protein.
  
     0.663
lp_1446
Cell surface protein, CscB family.
  
    0.659
lp_0121
Hypothetical protein.
  
     0.629
lp_0366
Ribonuclease H-like protein.
  
    0.590
lp_0240
Hypothetical protein.
   
    0.587
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.