STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptp1Protein-tyrosine phosphatase. (248 aa)    
Predicted Functional Partners:
ptp2
Protein-tyrosine phosphatase.
  
 
 
0.922
ptp3
Protein-tyrosine phosphatase.
  
  
 
0.919
cps4C
Polysaccharide biosynthesis protein; phosphatase.
   
 
 0.903
cps2C
Polysaccharide biosynthesis protein,phosphotyrosine-protein phosphatase.
   
 
 0.901
lp_3060
Transcription regulator, AraC family.
   
    0.790
tadA
Cytidine/deoxycytidylate deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
      0.563
ppiB
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.529
lp_0869
Extracellular protein, Ser/Thr-rich.
    
   0.505
lp_0068
Hypothetical membrane protein, DUF1212 family.
  
    0.504
pva1
Penicillin V acylase family protein.
 
    0.404
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.