STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_00704-hydroxyphenylacetate-3-hydroxylase,C-terminus (pseudogene). (415 aa)    
Predicted Functional Partners:
lp_0063
Hypothetical protein.
 
    0.687
lp_0071
4-hydroxyphenylacetate-3-hydroxylase,N-terminus (pseudogene).
       0.565
lp_0163
acyl-CoA dehydrogenase domain protein.
 
   
 0.529
lp_0072
RNA-binding protein, ASCH domain.
  
    0.519
cps3B
Glycosyltransferase, family 2 (GT2).
  
     0.517
lp_1988
Hypothetical membrane protein.
  
     0.487
adhE
Bifunctional protein: alcohol dehydrogenase; acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.453
cps3A
Glycosyltransferase, family 2 (GT2).
  
     0.436
lp_0060
Short-chain dehydrogenase/oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.433
lp_0493
Hypothetical protein.
  
     0.416
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.