STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0085Multidrug extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps. (444 aa)    
Predicted Functional Partners:
crtM
Dehydrosqualene synthase.
   
 
 0.740
lp_3160
Multidrug transport protein, major facilitator superfamily (MFS).
  
  
 0.707
lp_2564
Hypothetical membrane protein.
   
  
 0.657
lp_0237
Hypothetical membrane protein.
      
 0.634
gapB
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.632
rpsA
30S ribosomal protein S1.
  
    0.577
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
 0.527
gshR3
Glutathione reductase.
   
  
 0.471
fusA1
Elongation factor G.
 
  
 0.426
lp_2856
ABC transporter, permease protein.
  
  
 0.403
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.