Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lp_0122Alpha-beta hydrolase superfamily. (260 aa)    
Predicted Functional Partners:
lp_0973
Esterase (short chain).
     
 0.855
lp_0121
Hypothetical protein.
  
    0.709
lp_0163
acyl-CoA dehydrogenase domain protein.
 
 0.653
citG
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase.
 
    0.614
citR
Citrate lyase regulator, SorC family.
  
     0.532
lp_0557
Serine/threonine protein phosphatase.
    
  0.529
citC
[citrate (pro-3S)-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
     0.529
lp_0120
Amino acid/polyamine transport protein, APC family.
       0.476
citX
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.
 
    0.444
citD
Citrate lyase, gamma chain, acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
   
 0.427
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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