STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0154Transcription regulator, PadR family. (109 aa)    
Predicted Functional Partners:
lp_0155
Hypothetical protein.
  
    0.900
lp_0156
Hypothetical protein.
  
    0.751
gntR
Transcription regulator, GntR family.
   
  
 0.747
arsR
Regulator of arsenical resistance.
  
  
 0.719
padR
Transcriptional regulator of phenolic acid metabolism, PadR family.
   
  
 0.708
pdhA
Pyruvate dehydrogenase complex, E1 component,alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
   
    0.703
lp_2787
Hydrolase, HAD superfamily, Cof family.
   
    0.703
lp_2098
Metallophosphoesterase, lipoprotein precursor.
  
    0.667
lp_3417
Transcription regulator, TetR family.
  
   
 0.632
lp_1124
Cell surface hydrolase, LPXTG-motif cell wall anchor.
 
     0.580
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.