Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_0165Transcription regulator, TetR family. (172 aa)    
Predicted Functional Partners:
lp_1446
Cell surface protein, CscB family.
  
     0.593
dak3
Dihydroxyacetone phosphotransferase, phosphoryl donor protein.
 
  
 0.583
lp_0164
Hypothetical membrane protein, DUF1393 family.
  
    0.499
dak2
Dihydroxyacetone phosphotransferase,ADP-binding subunit.
 
    0.463
lp_0128
Transcription regulator, MarR family.
  
    0.456
lp_0366
Ribonuclease H-like protein.
  
    0.454
lp_0954
Transcription regulator, MarR family.
  
    0.439
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.400
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.