STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0182endo-beta-N-acetylglucosaminidase. (948 aa)    
Predicted Functional Partners:
lp_3631
Alpha-mannosidase (promiscuous).
 
  
 0.843
lp_0923
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
    0.694
malS
Alpha-amylase, maltodextrins and cyclomaltodextrins.
   
  
 0.640
lp_3642
ABC transporter, substrate binding protein,mannose-related oligosaccharides.
 
     0.632
lp_3632
Glycosyl hydrolase, DUF336 family.
 
    0.630
yesN
Two-component system response regulator.
  
    0.620
lp_2486
Mucus-binding protein, LPXTG-motif cell wall anchor.
  
   
 0.609
lp_3644
ABC transporter, permease protein,mannose-related oligosaccharides.
  
     0.588
lp_3127
Mucus-binding protein, LPXTG-motif cell wall anchor.
  
   
 0.583
lp_3643
ABC transporter, permease protein,mannose-related oligosaccharides.
 
     0.579
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.