STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_0200ABC transporter, substrate binding protein. (553 aa)    
Predicted Functional Partners:
oppB
Oligopeptide ABC transporter, permease protein.
 0.981
oppF
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.965
oppC
Oligopeptide ABC transporter, permease protein.
 
 0.963
oppD
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.959
lp_0201
ABC transporter, substrate binding protein.
 
 
 
0.651
lp_3117
Cell surface protein, CscC family.
   
  
 0.560
bla2
Beta-lactamase, class A.
     
 0.547
lp_0618
Cell surface hydrolase, membrane-bound, DUF915 family.
      
 0.538
lp_1156
Cell surface hydrolase, DUF915 family.
      
 0.538
lp_1165
Cell surface hydrolase, DUF915 family.
      
 0.538
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.