Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lp_0218ABC transporter, ATP-binding protein. (468 aa)    
Predicted Functional Partners:
lp_0217
ABC transporter, permease protein.
 
 
 0.995
lp_0219
ABC transporter, permease protein.
 
    0.984
lp_0149
Cobalt (or cobalamine) ABC transporter,ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
 
0.745
lp_1121
Hypothetical membrane protein.
   
 
 0.728
lp_0148
Cobalt (or cobalamine) ABC transporter,permease protein.
  
 
 0.655
ecfT
ABC transporter, permease protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.655
mdxF
Maltodextrin ABC transporter, permease protein.
  
  
  0.613
mdxE
Maltodextrin ABC transporter, substrate binding protein.
  
  
  0.605
ugpC
Glycerol-3-phosphate ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 
0.605
larO
Cobalt ABC transporter, ATP-binding protein; Probable ATP-binding component of the energy-coupling factor (ECF) transporter complex LarMNQO involved in nickel import. LarO is presumably responsible for energy coupling to the transport system.
  
 
 
0.601
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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