STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0219ABC transporter, permease protein. (189 aa)    
Predicted Functional Partners:
lp_0217
ABC transporter, permease protein.
 
  
 0.997
lp_0218
ABC transporter, ATP-binding protein.
 
    0.985
lp_0149
Cobalt (or cobalamine) ABC transporter,ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
  
  
 0.621
thiP
Hydroxymethylpyrimidine permease.
   
  
 0.568
lp_2521
Transcription regulator, AsnC-type.
      
 0.546
lp_3215
Hypothetical protein.
      
 0.546
dps2
DNA-binding ferritin-like protein, DPS family; Belongs to the Dps family.
      
 0.546
lp_3442
Heavy metal binding protein.
      
 0.546
thiD
Phosphomethylpyrimidine kinase & hydroxymethylpyrimidine kinase.
  
    0.503
lp_3591
Hypothetical membrane protein.
      
 0.503
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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