Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| arsC | nox3 | lp_0059 | lp_1925 | Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | NADH oxidase. | 0.495 |
| arsC | trxA1 | lp_0059 | lp_0236 | Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Thioredoxin; Belongs to the thioredoxin family. | 0.667 |
| arsC | trxB | lp_0059 | lp_0761 | Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Thioredoxin reductase (NADPH). | 0.744 |
| arsC | trxH | lp_0059 | lp_2633 | Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Thioredoxin H-type. | 0.563 |
| clpP | groEL | lp_0786 | lp_0728 | Endopeptidase Clp, proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | GroEL chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.964 |
| clpP | tpx | lp_0786 | lp_2323 | Endopeptidase Clp, proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. | 0.452 |
| clpP | trxA1 | lp_0786 | lp_0236 | Endopeptidase Clp, proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | Thioredoxin; Belongs to the thioredoxin family. | 0.530 |
| clpP | trxB | lp_0786 | lp_0761 | Endopeptidase Clp, proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | Thioredoxin reductase (NADPH). | 0.412 |
| clpP | trxH | lp_0786 | lp_2633 | Endopeptidase Clp, proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | Thioredoxin H-type. | 0.418 |
| groEL | clpP | lp_0728 | lp_0786 | GroEL chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | Endopeptidase Clp, proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.964 |
| groEL | nox3 | lp_0728 | lp_1925 | GroEL chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | NADH oxidase. | 0.476 |
| groEL | trxA1 | lp_0728 | lp_0236 | GroEL chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | Thioredoxin; Belongs to the thioredoxin family. | 0.553 |
| groEL | trxB | lp_0728 | lp_0761 | GroEL chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | Thioredoxin reductase (NADPH). | 0.562 |
| groEL | trxH | lp_0728 | lp_2633 | GroEL chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | Thioredoxin H-type. | 0.525 |
| gshR1 | nox3 | lp_0369 | lp_1925 | Glutathione reductase. | NADH oxidase. | 0.427 |
| gshR1 | tpx | lp_0369 | lp_2323 | Glutathione reductase. | Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. | 0.410 |
| gshR1 | trxA1 | lp_0369 | lp_0236 | Glutathione reductase. | Thioredoxin; Belongs to the thioredoxin family. | 0.639 |
| gshR1 | trxB | lp_0369 | lp_0761 | Glutathione reductase. | Thioredoxin reductase (NADPH). | 0.412 |
| lp_2585 | trxA1 | lp_2585 | lp_0236 | Ferredoxin NAD(P) reductase. | Thioredoxin; Belongs to the thioredoxin family. | 0.705 |
| lp_2585 | trxH | lp_2585 | lp_2633 | Ferredoxin NAD(P) reductase. | Thioredoxin H-type. | 0.718 |
page 1 of 4