Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
treRTrehalose operon transcriptional repressor,GntR family. (239 aa)    
Predicted Functional Partners:
treA
Trehalose-6-phosphate hydrolase.
 
  
 0.978
pts4ABC
PTS system, trehalose-specific IIBC component.
 
  
 0.937
pts5ABC
PTS system, trehalose-specific IIBC component.
 
  
 0.867
lp_0245
Transcription regulator, GntR family.
  
    0.775
lp_2651
Transcription regulator, GntR family.
  
    0.747
lp_3506
Transcription regulator, GntR family.
  
    0.618
pts28ABC
PTS system, beta-glucosides-specific EIIABC component.
 
  
 0.610
pts26BCA
PTS system, sucrose-specific EIIBCA component.
 
  
 0.565
deoR
Deoxyribonucleoside regulator, putative inducer deoxyribose 5-P.
   
  
 0.531
pts11BC
PTS system, beta-glucosides-specific EIIBC component.
 
  
 0.473
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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