STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcDGlycolate dehydrogenase, subunit GlcD,FAD-binding. (464 aa)    
Predicted Functional Partners:
kat
Catalase; Belongs to the catalase family.
   
 0.930
lp_0163
acyl-CoA dehydrogenase domain protein.
 
 
 0.918
gph1
Phosphohydrolase.
    
 0.912
lp_1932
Phosphohydrolase.
    
 0.912
lox
NAD-independent L-lactate dehydrogenase.
 
 
 0.609
idi1
Isopentenyl diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.599
lp_3563
Sodium-coupled N-acetylneuraminate transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.595
pdhA
Pyruvate dehydrogenase complex, E1 component,alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
    
 
 0.570
mdxG
Maltodextrin ABC transporter, permease protein.
      
 0.541
malS
Alpha-amylase, maltodextrins and cyclomaltodextrins.
   
  
 0.536
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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