STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0301Membrane-bound protease, CAAX family. (239 aa)    
Predicted Functional Partners:
plnI
Bacteriocin immunity protein PlnI,membrane-bound protease CAAX family.
  
    0.748
lp_0300
Membrane-bound protease, CAAX family.
 
   
0.711
plnP
Bacteriocin immunity protein PlnP,membrane-bound protease CAAX family.
  
     0.702
lp_2911
Membrane-bound protease, CAAX family.
  
     0.601
lp_3047
Hypothetical protein.
  
     0.541
lp_1688
Transcription regulator, TetR family.
  
     0.534
lp_0302
Extracellular transglycosylase.
       0.503
lp_3048
Transcription regulator, Xre family.
  
    0.500
lp_1257
Hypothetical protein.
  
    0.439
lp_1944
Multidrug ABC transporter, permease protein.
  
  
 0.439
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.