STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0304Extracellular transglycosylase. (212 aa)    
Predicted Functional Partners:
tagE3
Poly(glycerol-phosphate) alpha-glucosyltransferase.
  
  
 0.697
copA
Copper transporting ATPase.
      
 0.686
pnuC1
Nicotinamide mononucleotide transporter.
  
   
 0.660
copB
Copper transporting ATPase.
      
 0.632
tagE1
Poly(glycerol-phosphate) alpha-glucosyltransferase.
  
  
 0.604
tpk
Thiamin pyrophosphokinase.
     
 0.557
lp_3278
Amino acid transport protein.
   
  
 0.549
mtsC
Manganese ABC transporter, ATP-binding protein.
   
  
 0.510
pyrAB
Carbamoyl-phosphate synthase,pyrimidine-specific, large chain.
  
  
 0.508
livA
Branched-chain amino acid ABC transporter,substrate binding protein.
      
 0.503
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.