STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndh1NADH dehydrogenase. (400 aa)    
Predicted Functional Partners:
ndh2
NADH dehydrogenase, membrane-anchored.
  
  
 
0.924
cydA
Cytochrome D ubiquinol oxidase, subunit I.
 
  
 0.883
narK
Nitrite extrusion protein.
      
 0.832
lp_1135
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
  
 0.786
hepB2
Heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family.
 
  
 0.762
lp_1715
1,4-dihydroxy-2-naphthoate octaprenyltransferase, UbiA prenyltransferase family.
 
  
 0.757
narG
Nitrate reductase, alpha chain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
  
 0.750
lp_1546
1,4-dihydroxy-2-naphthoate octaprenyltransferase, UbiA family.
 
  
 0.748
cydD
Cytochrome D ABC transporter, ATP-binding and permease protein.
 
  
 0.737
hepB1
Heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family.
 
  
 0.736
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.