Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylP1Carbohydrate (isoprimoverose like)/proton symporter, GPH family. (438 aa)    
Predicted Functional Partners:
lp_2820
Hypothetical membrane protein, DUF1440 family.
 
    0.616
lp_0320
Hypothetical protein.
   
    0.598
lp_0442
Transcription regulator, RpiR family.
  
  
 0.503
lp_0332
Hypothetical membrane protein.
  
    0.491
lp_0558
Di-and tricarboxylate transporter.
  
    0.489
lp_0333
Hypothetical protein.
  
    0.483
pox3
Pyruvate oxidase; Belongs to the TPP enzyme family.
   
    0.474
lp_0125
Purine nucleoside phosphorylase.
   
  
 0.464
kat
Catalase; Belongs to the catalase family.
   
    0.458
mrsB
protein-methionine-S-oxide reductase.
  
    0.457
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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