STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0347Transcription regulator, PadR family. (180 aa)    
Predicted Functional Partners:
lp_0348
Multidrug-efflux transporter, major facilitator superfamily (MFS), EmrB family.
 
    0.845
padR
Transcriptional regulator of phenolic acid metabolism, PadR family.
  
   
 0.801
arsR
Regulator of arsenical resistance.
  
  
 0.739
gntR
Transcription regulator, GntR family.
   
  
 0.711
lp_3097
Transcription regulator, TetR family.
  
  
 0.624
lp_2835
Phosphohydrolase, HAD superfamily.
  
    0.619
lp_2714
Diguanylate cyclase/phosphodiesterase, EAL domain.
  
    0.550
lp_0300
Membrane-bound protease, CAAX family.
 
    0.486
lp_3142
Type 1 glutamine amidotransferase (GATase1)-like domain protein, ThiJ/PfpI family.
  
    0.482
lp_2715
Hypothetical membrane protein.
  
    0.464
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.