Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
choSGlycine betaine/carnitine/choline ABC transporter, substrate binding and permease protein. (508 aa)    
Predicted Functional Partners:
choQ
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein.
 
 0.999
opuA
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein.
 
 0.998
opuC
Glycine betaine/carnitine/choline ABC transporter, substrate binding protein.
 
 
0.949
opuD
Glycine betaine/carnitine/choline ABC transporter, permease protein.
 
 
0.944
opuB
Glycine betaine/carnitine/choline ABC transporter, permease protein.
 
 
0.943
minC
Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization.
   
  
 0.808
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
  
  
 0.711
gshR1
Glutathione reductase.
 
  
 0.709
pepD2
Dipeptidase.
   
  
 0.679
gidC
Glucose-inhibited division protein GidC; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
      
 0.650
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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