STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0394Transport protein, major facilitator superfamily (MFS). (384 aa)    
Predicted Functional Partners:
lp_0396
Transcription regulator, AraC family.
 
    0.946
lp_0395
Hydrolase, HAD superfamily, Cof family.
 
    0.940
thgA1
Galactoside O-acetyltransferase.
  
    0.801
lp_2084
Transport protein, major facilitator superfamily (MFS).
  
     0.555
lp_2917
Transport protein, major facilitator superfamily (MFS).
  
    0.462
lp_2911
Membrane-bound protease, CAAX family.
  
    0.459
lp_0397
Hydrolase, HAD superfamily, Cof family.
  
    0.443
malA1
Maltase/sucrase.
  
    0.442
plnH
Bacteriocin ABC transporter, accessory factor PlnH.
 
 
 0.433
lp_1649
ABC transporter, permease protein.
  
     0.410
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.