STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0396Transcription regulator, AraC family. (290 aa)    
Predicted Functional Partners:
lp_0394
Transport protein, major facilitator superfamily (MFS).
 
    0.946
lp_0395
Hydrolase, HAD superfamily, Cof family.
 
  
 0.931
thgA1
Galactoside O-acetyltransferase.
  
    0.772
lp_3649
Transcription regulator, GntR family.
  
  
 0.768
lp_1821
Transcription regulator, MarR family.
   
  
 0.717
lp_1443
Transcription regulator, TetR family.
      
 0.702
lp_3079
Transcription regulator, PadR family.
   
  
 0.696
lp_3234
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
  
 0.680
lp_0889
Transcription regulator, MarR family.
   
  
 0.659
lp_3646
Transcription regulator, AraC family.
  
    0.630
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.