Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| lamA | lamB | lp_3580 | lp_3582 | Two-component system response regulator; accesory gene regulator protein A. | Auto-inducing peptide (AIP) export/modification protein; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family. | 0.918 |
| lamA | plnB | lp_3580 | lp_0416 | Two-component system response regulator; accesory gene regulator protein A. | Two-componet system histidine protein kinase PlnB; sensor protein. | 0.922 |
| lamB | lamA | lp_3582 | lp_3580 | Auto-inducing peptide (AIP) export/modification protein; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family. | Two-component system response regulator; accesory gene regulator protein A. | 0.918 |
| lamB | lamR | lp_3582 | lp_3087 | Auto-inducing peptide (AIP) export/modification protein; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family. | Two-component system response regulator. | 0.787 |
| lamB | plnB | lp_3582 | lp_0416 | Auto-inducing peptide (AIP) export/modification protein; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family. | Two-componet system histidine protein kinase PlnB; sensor protein. | 0.917 |
| lamB | pltR | lp_3582 | lp_1356 | Auto-inducing peptide (AIP) export/modification protein; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family. | Two-component system response regulator. | 0.424 |
| lamR | lamB | lp_3087 | lp_3582 | Two-component system response regulator. | Auto-inducing peptide (AIP) export/modification protein; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family. | 0.787 |
| lamR | plnB | lp_3087 | lp_0416 | Two-component system response regulator. | Two-componet system histidine protein kinase PlnB; sensor protein. | 0.958 |
| plnA | plnB | lp_0415 | lp_0416 | Plantaricin A precursor peptide, induction factor; This heat stable bacteriocin inhibits the growth of closely related Lactobacillus species. It may act as a pore-forming protein, creating a channel in the cell membrane through a 'barrel stave' mechanism. | Two-componet system histidine protein kinase PlnB; sensor protein. | 0.983 |
| plnA | plnC | lp_0415 | lp_0417 | Plantaricin A precursor peptide, induction factor; This heat stable bacteriocin inhibits the growth of closely related Lactobacillus species. It may act as a pore-forming protein, creating a channel in the cell membrane through a 'barrel stave' mechanism. | Two-component response regulator PlnC,activator. | 0.913 |
| plnA | plnD | lp_0415 | lp_0418 | Plantaricin A precursor peptide, induction factor; This heat stable bacteriocin inhibits the growth of closely related Lactobacillus species. It may act as a pore-forming protein, creating a channel in the cell membrane through a 'barrel stave' mechanism. | Two-component response regulator PlnD,repressor. | 0.892 |
| plnA | plnE | lp_0415 | lp_0422 | Plantaricin A precursor peptide, induction factor; This heat stable bacteriocin inhibits the growth of closely related Lactobacillus species. It may act as a pore-forming protein, creating a channel in the cell membrane through a 'barrel stave' mechanism. | Bacteriocin precursor peptide PlnE. | 0.913 |
| plnA | plnF | lp_0415 | lp_0421 | Plantaricin A precursor peptide, induction factor; This heat stable bacteriocin inhibits the growth of closely related Lactobacillus species. It may act as a pore-forming protein, creating a channel in the cell membrane through a 'barrel stave' mechanism. | Bacteriocin precursor peptide PlnF. | 0.909 |
| plnA | plnP | lp_0415 | lp_0412 | Plantaricin A precursor peptide, induction factor; This heat stable bacteriocin inhibits the growth of closely related Lactobacillus species. It may act as a pore-forming protein, creating a channel in the cell membrane through a 'barrel stave' mechanism. | Bacteriocin immunity protein PlnP,membrane-bound protease CAAX family. | 0.669 |
| plnB | lamA | lp_0416 | lp_3580 | Two-componet system histidine protein kinase PlnB; sensor protein. | Two-component system response regulator; accesory gene regulator protein A. | 0.922 |
| plnB | lamB | lp_0416 | lp_3582 | Two-componet system histidine protein kinase PlnB; sensor protein. | Auto-inducing peptide (AIP) export/modification protein; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family. | 0.917 |
| plnB | lamR | lp_0416 | lp_3087 | Two-componet system histidine protein kinase PlnB; sensor protein. | Two-component system response regulator. | 0.958 |
| plnB | plnA | lp_0416 | lp_0415 | Two-componet system histidine protein kinase PlnB; sensor protein. | Plantaricin A precursor peptide, induction factor; This heat stable bacteriocin inhibits the growth of closely related Lactobacillus species. It may act as a pore-forming protein, creating a channel in the cell membrane through a 'barrel stave' mechanism. | 0.983 |
| plnB | plnC | lp_0416 | lp_0417 | Two-componet system histidine protein kinase PlnB; sensor protein. | Two-component response regulator PlnC,activator. | 0.998 |
| plnB | plnD | lp_0416 | lp_0418 | Two-componet system histidine protein kinase PlnB; sensor protein. | Two-component response regulator PlnD,repressor. | 0.997 |
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