STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plnUHypothetical membrane protein PlnU,membrane-bound protease CAAX family. (222 aa)    
Predicted Functional Partners:
plnT
Hypothetical membrane protein PlnT,membrane-bound protease CAAX family.
  
  
 0.959
plnV
Hypothetical membrane protein plnV,membrane-bound protease CAAX family.
  
  
 0.956
plnW
Hypothetical membrane protein PlnW,membrane-bound protease CAAX family.
 
  
 0.948
plnS
Plantaricin biosynthesis protein PlnS.
  
  
 0.908
plnG
Bacteriocin ABC-transporter, ATP-binding and permease protein PlnG.
  
  
 0.885
plnI
Bacteriocin immunity protein PlnI,membrane-bound protease CAAX family.
  
  
 0.836
plnH
Bacteriocin ABC transporter, accessory factor PlnH.
  
  
 0.745
plnO
Plantaricin biosynthesis protein PlnO.
  
  
 0.720
plnP
Bacteriocin immunity protein PlnP,membrane-bound protease CAAX family.
   
  
 0.695
lp_1988
Hypothetical membrane protein.
  
     0.681
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.