STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znuCZinc/iron ABC transporter, ATP-binding protein. (232 aa)    
Predicted Functional Partners:
znuB
Zinc/iron ABC transporter, permease protein.
 0.999
mtsB
Manganese ABC transporter, permease protein.
 
 0.964
lp_3018
ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
 0.899
lp_3302
Metal ion ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.897
potB
Spermidine/putrescine ABC transporter, permease protein.
   
  
 0.861
oppD
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.851
mtsA
Manganese/zinc ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.773
lp_3215
Hypothetical protein.
   
    0.586
mntA
Cadmium-/manganese-transporting P-type ATPase.
  
  
 0.542
rpsE
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
     0.541
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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