Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lp_0477Lipoate-protein ligase A. (310 aa)    
Predicted Functional Partners:
gcsH2
Glycine cleavage system, H protein.
 
 0.900
pdhC
Pyruvate dehydrogenase complex, E2 component; dihydrolipoamide S-acetyltransferase.
 
 0.899
lp_0476
Metal-dependent phosphohydrolase, HD family.
  
  
 0.857
lp_0796
Carboxylesterase.
  
    0.788
lp_1566
Hypothetical protein, HesB/YadR/YfhF-family.
  
    0.788
lplA1
Lipoate-protein ligase.
 
  
 0.786
lplA2
Lipoate-protein ligase.
 
  
 0.756
lp_0475
Hydrolase, HAD superfamily, Cof family.
  
  
 0.742
gcsH1
Glycine cleavage system, H protein.
 
 0.661
lp_2800
Transcription regulator. MarR family.
 
     0.657
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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