Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lp_0482Transcriptional activator, Rgg/GadR/MutR family. (289 aa)    
Predicted Functional Partners:
lp_3438
Hypothetical protein, DUF156 family.
   
    0.914
lp_0492
Transport protein, major facilitator superfamily (MFS).
 
    0.837
lp_0493
Hypothetical protein.
 
    0.722
lp_2049
Zinc-dependent protease, membrane associated.
      
 0.641
lp_3382
Prophage P3 protein 8, DNA primase/helicase.
 
     0.611
lp_0486
Pyridoxal-phosphate-dependent aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.553
lp_0490
NADPH-dependent FMN reductase.
 
     0.547
tkt1A
Transketolase, thiamine diphosphate binding domain.
  
    0.541
lp_0483
Lysine biosynthesis protein LysW.
       0.520
lp_0484
ATP-dependent carboxylate-amine/thiol ligase family protein; Belongs to the RimK family.
       0.520
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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