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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0482Transcriptional activator, Rgg/GadR/MutR family. (289 aa)    
Predicted Functional Partners:
lp_0492
Transport protein, major facilitator superfamily (MFS).
 
    0.829
lp_3438
Hypothetical protein, DUF156 family.
   
    0.783
lp_0493
Hypothetical protein.
 
    0.709
lp_3382
Prophage P3 protein 8, DNA primase/helicase.
 
     0.610
lp_0490
NADPH-dependent FMN reductase.
 
     0.548
lp_0486
Pyridoxal-phosphate-dependent aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.529
lp_0483
Lysine biosynthesis protein LysW.
       0.520
lp_0484
ATP-dependent carboxylate-amine/thiol ligase family protein; Belongs to the RimK family.
       0.520
lp_0485
Hypothetical protein.
       0.520
argC1
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
       0.520
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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