STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0486Pyridoxal-phosphate-dependent aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (439 aa)    
Predicted Functional Partners:
lp_0485
Hypothetical protein.
  
    0.935
lp_0488
Bifunctional protein: acetyl-glutamate kinase; acetyl-ornithine deacetylase.
  
    0.904
tkt1A
Transketolase, thiamine diphosphate binding domain.
  
  
 0.901
argC1
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
    0.882
lp_0484
ATP-dependent carboxylate-amine/thiol ligase family protein; Belongs to the RimK family.
  
    0.878
tkt1B
Transketolase, pyrimidine-binding domain.
  
    0.867
rfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.830
lp_0483
Lysine biosynthesis protein LysW.
  
    0.823
lp_1173
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.808
lp_0493
Hypothetical protein.
  
  
 0.749
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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