STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0570Metallopeptidase, SprT family; Belongs to the SprT family. (148 aa)    
Predicted Functional Partners:
tex
Transcription accessory protein, contains S1 RNA binding domain.
  
  
 0.889
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
  
    0.676
lp_0706
DNA replication intiation control protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
    0.665
hom2
Homoserine dehydrogenase.
  
    0.609
lp_0568
Hypothetical protein.
  
    0.572
lp_1528
Ribosome biogenesis GTPase, YqeH family.
  
    0.508
lp_2580
Sulfatase, alkaline phosphatase superfamily,membrane-bound.
  
    0.497
lon
Extracellular protease Lon, peptidase S16 family, membrane-bound.
 
    0.480
ftsQ
Cell division initiation protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
  
    0.476
lp_1283
Membrane sulfatase, alkaline phosphatase superfamily protein.
  
    0.468
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.