STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
panDAspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (130 aa)    
Predicted Functional Partners:
npsA
Non-ribosomal peptide synthetase NpsA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.955
gadB
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
     
 0.953
npsB
Non-ribosomal peptide synthetase NpsB.
  
  
 0.932
npsC
4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
  
  
 0.900
lp_0580
Metal-dependent phosphohydrolase, HD family.
  
    0.897
lp_2738
L-asparaginase.
    
 0.853
ansB
Aspartate ammonia-lyase.
     
 0.825
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
    
  0.813
asnB2
Asparagine synthase (glutamine-hydrolysing).
   
 
  0.805
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 
  0.803
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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