STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
manRSigma54 activator, mannose PTS operon regulator. (949 aa)    
Predicted Functional Partners:
rpoN
DNA-directed RNA polymerase, sigma factor 54.
 
 
 0.975
pts10A
PTS system, mannose-specific EIIAcomponent.
  
  
 0.857
pts10B
PTS system, mannose-specific EIIB component.
  
  
 0.826
pts9AB
PTS system, mannose-specific EIIAB component.
  
  
 0.803
mtlR
Transcription regulator, BglG family, mannitol operon.
 
   
 0.724
pts9C
PTS system, mannose-specific EIIC component.
  
  
 0.708
pts9D
PTS system, mannose-specific EIID component.
  
  
 0.679
pts17A
PTS system, glucitol/sorbitol-specific EIIA component.
  
  
 0.636
ctpA
Carboxy-terminal proteinase, S41 family,peptidoglycan-bound; Belongs to the peptidase S41A family.
  
    0.595
pts11BC
PTS system, beta-glucosides-specific EIIBC component.
   
  
 0.571
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.