STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0630Prophage P1 protein 7. (138 aa)    
Predicted Functional Partners:
lp_0631
Prophage P1 protein 8, phage transcription regulator, Cro/CI family.
 
    0.941
lp_2449
Prophage P2a protein 8.
  
   
0.846
lp_2448
Prophage P2a protein 9, phage transcription regulator, Cro/CI family.
 
    0.791
lp_0917
Phage transcription regulator, Cro/CI family.
 
     0.767
lp_0642
Prophage P1 protein 19.
 
     0.674
lp_0681
Prophage P1 protein 58, lysin.
 
    0.639
lp_2426
Prophage P2a protein 31; phage transcription regulator, ArpU family.
  
     0.634
lp_2401
Prophage P2a protein 56, lysin.
 
    0.620
lp_0628
Prophage P1 protein 5, superinfection exclusion (cell surface N-anchored).
 
    0.611
lp_0656
Prophage P1 protein 33, phage transcription regulator, ArpU family.
  
     0.610
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.