Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
lp_0632Prophage P1 protein 9, phage transcription regulator, Cro/CI family. (76 aa)    
Predicted Functional Partners:
lp_0631
Prophage P1 protein 8, phage transcription regulator, Cro/CI family.
  
    0.551
lp_0630
Prophage P1 protein 7.
       0.505
lp_2437
Prophage P2a protein 20, replication protein DnaD domain.
  
  
 0.484
lp_2433
Prophage P2a protein 24; endodeoxyribonuclease RusA-like.
   
  
 0.464
lp_2397
Prophage P2a protein 59; extracellular polysaccharide deacetylase, lipid-anchored.
   
  
 0.451
lp_0656
Prophage P1 protein 33, phage transcription regulator, ArpU family.
   
  
 0.450
lp_0661
Prophage P1 protein 38, terminase large subunit TerL.
   
  
 0.450
lp_2417
Prophage P2a protein 40; major capsid protein.
   
  
 0.450
lp_2466
Prophage P2b protein 15, terminase large subunit.
   
  
 0.445
dnaD
DNA replication protein DnaD.
     
 0.431
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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