STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0632Prophage P1 protein 9, phage transcription regulator, Cro/CI family. (76 aa)    
Predicted Functional Partners:
lp_0631
Prophage P1 protein 8, phage transcription regulator, Cro/CI family.
  
    0.562
lp_0630
Prophage P1 protein 7.
       0.510
lp_2437
Prophage P2a protein 20, replication protein DnaD domain.
  
  
 0.499
lp_2448
Prophage P2a protein 9, phage transcription regulator, Cro/CI family.
  
  
 0.471
lp_2417
Prophage P2a protein 40; major capsid protein.
   
  
 0.447
lp_0681
Prophage P1 protein 58, lysin.
   
  
 0.446
lp_2397
Prophage P2a protein 59; extracellular polysaccharide deacetylase, lipid-anchored.
   
  
 0.445
lp_0656
Prophage P1 protein 33, phage transcription regulator, ArpU family.
   
  
 0.444
lp_0661
Prophage P1 protein 38, terminase large subunit TerL.
   
  
 0.444
dnaD
DNA replication protein DnaD.
     
 0.441
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.