Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_0635Prophage P1 protein 12, phage transcription regulator. (66 aa)    
Predicted Functional Partners:
lp_0638
Prophage P1 protein 15.
  
    0.656
lp_0640
Prophage P1 protein 17.
  
    0.578
lp_0634
Prophage P1 protein 11, phage transcription regulator.
  
    0.550
lp_0636
Prophage P1 protein 13.
  
    0.535
lp_0633
Prophage P1 protein 10.
  
    0.481
lp_0637
Prophage P1 protein 14.
  
    0.438
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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