STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0638Prophage P1 protein 15. (94 aa)    
Predicted Functional Partners:
lp_0637
Prophage P1 protein 14.
  
    0.907
lp_0640
Prophage P1 protein 17.
  
    0.806
lp_0639
Prophage P1 protein 16.
  
    0.797
lp_0642
Prophage P1 protein 19.
  
    0.674
lp_0641
Prophage P1 protein 18, DNA single-strand annealing protein RecT.
  
    0.668
lp_0646
Prophage P1 protein 23.
  
    0.666
lp_0635
Prophage P1 protein 12, phage transcription regulator.
  
    0.659
lp_0636
Prophage P1 protein 13.
  
    0.652
lp_0653
Prophage P1 protein 30.
  
    0.636
lp_2441
Prophage P2a protein 16.
   
    0.431
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.