STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0642Prophage P1 protein 19. (286 aa)    
Predicted Functional Partners:
lp_0641
Prophage P1 protein 18, DNA single-strand annealing protein RecT.
 
  
 0.993
lp_0640
Prophage P1 protein 17.
  
  
 0.980
rexB
ATP-dependent nuclease, subunit B; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' -> 3' nuclease activity; Belongs to the helicase family. AddB/RexB type 2 subfamily.
  
 
 0.863
lp_0647
Prophage P1 protein 24, holliday junction resolvase.
 
    0.758
lp_0646
Prophage P1 protein 23.
  
    0.756
lp_0656
Prophage P1 protein 33, phage transcription regulator, ArpU family.
 
    0.737
lp_0648
Prophage P1 protein 25.
  
    0.711
lp_0643
Prophage P1 protein 20.
 
    0.701
lp_2795
Cell surface protein precursor, LPXTG-motif cell wall anchor.
   
    0.686
lp_2449
Prophage P2a protein 8.
 
     0.681
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (6%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.