STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0663Prophage P1 protein 40, minor head protein. (314 aa)    
Predicted Functional Partners:
lp_0662
Prophage P1 protein 39, portal protein.
 
    0.954
lp_0661
Prophage P1 protein 38, terminase large subunit TerL.
 
    0.949
lp_0665
Prophage P1 protein 42, major capsid protein.
 
    0.896
lp_0673
Prophage P1 protein 50, tape measure protein.
 
    0.831
lp_0660
Prophage P1 protein 37, terminase small subunit TerS.
 
    0.811
lp_2420
Prophage P2a protein 37; portal protein.
 
    0.807
lp_2417
Prophage P2a protein 40; major capsid protein.
 
    0.803
lp_2421
Prophage P2a protein 36; terminase large subunit TerL.
 
    0.803
lp_2409
Prophage P2a protein 48; tape measure protein.
  
    0.763
lp_2422
Prophage P2a protein 35; terminase large subunit TerL.
 
    0.763
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.