STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0666Prophage P1 protein 43. (121 aa)    
Predicted Functional Partners:
lp_0667
Prophage P1 protein 44.
  
    0.959
lp_0669
Prophage P1 protein 46.
  
    0.958
lp_0665
Prophage P1 protein 42, major capsid protein.
  
    0.952
lp_0664
Prophage P1 protein 41, scaffold protein.
  
    0.948
lp_0668
Prophage P1 protein 45, head-tail joining protein.
  
    0.935
lp_0670
Prophage P1 protein 47, major tail protein 2 family.
  
    0.926
lp_0671
Prophage P1 protein 48.
  
    0.910
lp_0672
Prophage P1 protein 49.
  
    0.853
lp_2413
Prophage P2a protein 44.
  
    0.834
lp_2414
Prophage P2a protein 43; head-tail joining protein.
  
    0.832
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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