STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0673Prophage P1 protein 50, tape measure protein. (1334 aa)    
Predicted Functional Partners:
lp_0662
Prophage P1 protein 39, portal protein.
 
    0.841
lp_0663
Prophage P1 protein 40, minor head protein.
 
    0.831
lp_0674
Prophage P1 protein 51.
  
    0.816
lp_2408
Prophage P2a protein 49.
 
    0.801
lp_0676
Prophage P1 protein 53, GDSL-like lipase/acylhydrolase family.
  
    0.799
lp_0665
Prophage P1 protein 42, major capsid protein.
 
    0.796
lp_0675
Prophage P1 protein 52, endolysin.
  
    0.790
lp_0672
Prophage P1 protein 49.
  
    0.788
lp_0681
Prophage P1 protein 58, lysin.
 
    0.788
lp_2420
Prophage P2a protein 37; portal protein.
  
    0.774
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.