STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0683Prophage P1 protein 60, holin. (119 aa)    
Predicted Functional Partners:
lp_0681
Prophage P1 protein 58, lysin.
  
    0.792
lp_0682
Prophage P1 protein 59.
  
    0.785
lp_0680
Prophage P1 protein 57.
  
    0.784
lp_0677
Prophage P1 protein 54, minor head protein.
  
    0.782
lp_0678
Prophage P1 protein 55.
  
    0.781
lp_0679
Prophage P1 protein 56.
  
    0.779
lp_0673
Prophage P1 protein 50, tape measure protein.
  
    0.756
lp_0674
Prophage P1 protein 51.
  
    0.754
lp_0672
Prophage P1 protein 49.
  
    0.749
lp_0675
Prophage P1 protein 52, endolysin.
  
    0.749
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.