STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0688DNA entry nuclease. (325 aa)    
Predicted Functional Partners:
lp_0689
Cell surface protein, lipoprotein precursor.
 
    0.942
ftsK1
FtsK/SpoIIIE family protein; Belongs to the FtsK/SpoIIIE/SftA family.
     
 0.556
ogt
methylated-DNA-[protein]-cysteine S-methyltransferase.
  
  
 0.478
lp_0862
Hypothetical protein.
  
     0.467
lp_1645
Alcohol dehydrogenase.
  
    0.466
glgA
Glycogen synthase, ADP-glucose transglycosylase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
  
 0.447
pbp1A
Transpeptidase-transglycosylase (penicillin binding protein 1A).
   
  
 0.442
lp_0158
Hypothetical protein.
  
     0.417
mprF
Hypothetical membrane protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.
       0.405
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.