Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cgtA | lp_1528 | lp_2094 | lp_1528 | rRNA maturation GTPase CgtA, Obg family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Ribosome biogenesis GTPase, YqeH family. | 0.509 |
| cgtA | lp_1724 | lp_2094 | lp_1724 | rRNA maturation GTPase CgtA, Obg family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 23S rRNA methylase. | 0.441 |
| cgtA | rplJ | lp_2094 | lp_0621 | rRNA maturation GTPase CgtA, Obg family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.679 |
| cgtA | rplL | lp_2094 | lp_0622 | rRNA maturation GTPase CgtA, Obg family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 50S ribosomal protein L12/L7; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.541 |
| cgtA | rsmC | lp_2094 | lp_0695 | rRNA maturation GTPase CgtA, Obg family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 16S rRNA methyltransferase. | 0.650 |
| cgtA | trmD | lp_2094 | lp_1639 | rRNA maturation GTPase CgtA, Obg family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | tRNA (guanine-N1-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.587 |
| lp_1528 | cgtA | lp_1528 | lp_2094 | Ribosome biogenesis GTPase, YqeH family. | rRNA maturation GTPase CgtA, Obg family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.509 |
| lp_1528 | lp_1724 | lp_1528 | lp_1724 | Ribosome biogenesis GTPase, YqeH family. | 23S rRNA methylase. | 0.748 |
| lp_1528 | rplJ | lp_1528 | lp_0621 | Ribosome biogenesis GTPase, YqeH family. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.794 |
| lp_1528 | rplL | lp_1528 | lp_0622 | Ribosome biogenesis GTPase, YqeH family. | 50S ribosomal protein L12/L7; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.405 |
| lp_1528 | rsmC | lp_1528 | lp_0695 | Ribosome biogenesis GTPase, YqeH family. | 16S rRNA methyltransferase. | 0.540 |
| lp_1716 | lp_1724 | lp_1716 | lp_1724 | Potassium/ion channel protein. | 23S rRNA methylase. | 0.456 |
| lp_1716 | rsmC | lp_1716 | lp_0695 | Potassium/ion channel protein. | 16S rRNA methyltransferase. | 0.493 |
| lp_1724 | cgtA | lp_1724 | lp_2094 | 23S rRNA methylase. | rRNA maturation GTPase CgtA, Obg family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.441 |
| lp_1724 | lp_1528 | lp_1724 | lp_1528 | 23S rRNA methylase. | Ribosome biogenesis GTPase, YqeH family. | 0.748 |
| lp_1724 | lp_1716 | lp_1724 | lp_1716 | 23S rRNA methylase. | Potassium/ion channel protein. | 0.456 |
| lp_1724 | rplJ | lp_1724 | lp_0621 | 23S rRNA methylase. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.758 |
| lp_1724 | rplL | lp_1724 | lp_0622 | 23S rRNA methylase. | 50S ribosomal protein L12/L7; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.478 |
| lp_1724 | rsmC | lp_1724 | lp_0695 | 23S rRNA methylase. | 16S rRNA methyltransferase. | 0.471 |
| lp_1724 | trmD | lp_1724 | lp_1639 | 23S rRNA methylase. | tRNA (guanine-N1-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.499 |
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