STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rexRedox-sensitive transcription regulator; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (225 aa)    
Predicted Functional Partners:
lp_1153
Transcription regulator, TetR family.
   
  
 0.866
rnpA
Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.825
lp_3559
Transcription regulator, RpiR family.
 
  
 0.724
lp_3521
Transcription regulator, RpiR family.
 
  
 0.718
lp_1157
Transcription regulator, RpiR family.
 
  
 0.713
lp_0442
Transcription regulator, RpiR family.
  
  
 0.678
lp_0285
Transcription regulator, RpiR family.
  
  
 0.673
lp_2603
Transcription regulator, RpiR family.
  
  
 0.670
lp_1934
Transcription regulator, RpiR family.
  
  
 0.667
lp_0163
acyl-CoA dehydrogenase domain protein.
  
  
 0.664
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.