STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comFALate competence protein, ATP-dependent DNA helicase/translocase. (450 aa)    
Predicted Functional Partners:
comFC
Late competence protein,phosphoribosyltransferase.
  
  
 0.987
comEA
ComE operon protein 1, DNA receptor.
   
  
 0.963
comEC
ComE operon protein 3, DNA transport protein.
  
  
 0.919
gspE
Bacterial type II secretion/trafficking system protein E, ATPase.
   
  
 0.882
dprA
DNA processing protein.
   
  
 0.855
lp_2248
Bacterial type II secretion/trafficking system protein F.
   
  
 0.756
lp_2247
Bacterial type II secretion/trafficking system protein.
 
  
 0.747
lp_0734
Hypothetical protein, DUF1949 family.
  
  
 0.740
rpoE
DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
   
 0.719
lp_2246
Bacterial type II secretion/trafficking system extracellular protein.
   
  
 0.703
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.