STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comFCLate competence protein,phosphoribosyltransferase. (224 aa)    
Predicted Functional Partners:
comFA
Late competence protein, ATP-dependent DNA helicase/translocase.
  
  
 0.987
comEC
ComE operon protein 3, DNA transport protein.
 
  
 0.936
comEA
ComE operon protein 1, DNA receptor.
  
  
 0.925
radC
DNA repair protein.
 
    0.813
dprA
DNA processing protein.
 
 
 0.760
lp_0734
Hypothetical protein, DUF1949 family.
  
    0.736
tyrA
Prephenate dehydrogenase.
   
  
 0.732
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.700
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
    0.669
tagH
Teichoic acid ABC transporter, ATP-binding protein; Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system.
   
    0.650
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.