STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0778Hypothetical membrane protein. (178 aa)    
Predicted Functional Partners:
lp_0340
Hypothetical protein.
  
     0.498
lp_1168
Hypothetical protein.
   
    0.493
lp_0780
Hypothetical protein, cofD family; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
    0.490
lp_0779
P-loop ATPase family protein; Displays ATPase and GTPase activities.
  
    0.485
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
       0.471
lp_0816
Transcription regulator, MarR family.
  
    0.464
lp_1456
ABC transporter, permease protein.
  
     0.460
gadB
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
   
  
 0.455
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.443
argH
Argininosuccinate lyase.
       0.443
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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