STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0783Oligopeptide ABC transporter, substrate binding protein. (550 aa)    
Predicted Functional Partners:
oppB
Oligopeptide ABC transporter, permease protein.
  
 0.882
oppD
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.849
oppC
Oligopeptide ABC transporter, permease protein.
  
 0.848
oppF
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.830
cblB
Cystathionine beta-lyase / cystathionine gamma-lyase.
   
  
 0.646
cbs
Cystathionine beta-synthase.
   
  
 0.552
pnuC1
Nicotinamide mononucleotide transporter.
   
  
 0.551
lp_3278
Amino acid transport protein.
      
 0.535
livA
Branched-chain amino acid ABC transporter,substrate binding protein.
      
 0.520
mtsC
Manganese ABC transporter, ATP-binding protein.
   
  
 0.512
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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