STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0804Hypothetical protein. (187 aa)    
Predicted Functional Partners:
lp_0805
Hydrolase, HAD superfamily, Cof family.
 
    0.947
lp_0479
Hypothetical protein, DUF1934 family.
  
    0.914
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
  
    0.689
lp_0871
Hypothetical membrane protein.
  
    0.677
lp_0869
Extracellular protein, Ser/Thr-rich.
  
    0.606
pta
Phosphate acetyltransferase.
       0.603
lp_1159
Extracellular protein, membrane-bound.
  
    0.549
lp_1583
Hypothetical protein.
  
    0.543
lp_1866
Extracellular protein, DUF2140 family.
  
     0.534
lp_1281
Hypothetical protein, DUF1797 family.
  
    0.533
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.