STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_0804Hypothetical protein. (187 aa)    
Predicted Functional Partners:
lp_0805
Hydrolase, HAD superfamily, Cof family.
 
    0.944
lp_0479
Hypothetical protein, DUF1934 family.
  
    0.917
lp_0871
Hypothetical membrane protein.
  
    0.681
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
  
    0.671
pta
Phosphate acetyltransferase.
  
    0.625
lp_0869
Extracellular protein, Ser/Thr-rich.
  
    0.608
lp_1583
Hypothetical protein.
  
    0.563
lp_1159
Extracellular protein, membrane-bound.
  
    0.562
lp_2156
Hypothetical membrane protein.
  
    0.552
lp_1281
Hypothetical protein, DUF1797 family.
  
    0.546
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.