Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_0830Transport protein, major facilitator family (MFS), N-terminal domain. (268 aa)    
Predicted Functional Partners:
lp_0831
Transport protein, major facilitator family (MFS), C-terminal domain.
 
    0.949
lp_0923
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
     0.552
lp_0433
Carbon-nitrogen hydrolase family protein.
   
  
 0.508
lp_1766
Acetyltransferase, GNAT family, C-terminal fragment.
   
    0.447
lp_3333
Hypothetical protein.
  
    0.422
lp_0828
Hypothetical protein.
       0.407
lp_0829
Nitroreductase family protein; Belongs to the flavin oxidoreductase frp family.
       0.407
lp_2486
Mucus-binding protein, LPXTG-motif cell wall anchor.
  
     0.405
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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